涓嬭澆鏄懼崱椹卞姩
http://www.nvidia.cn/Download/index.aspx?lang=cn
閫夋嫨涓庢樉鍗′竴鑷崇殑椹卞姩
涓嬭澆cuda toolkit
http://developer.nvidia.com/object/cuda_3_0_downloads.html
榪欓噷閫夋嫨鐨勬槸CUDA Toolkit for RedHat Enterprise Linux 5.3 64浣嶇殑錛屽洜涓虹郴緇熶負64浣?br />
鍚屾牱鍦ㄨ繖涓〉闈笅杞芥祴璇曠敤鐨凜UDA SDK錛屾祴璇曞畨瑁呯幆澧冩槸鍚︽垚鍔熴?br /> GPU Computing SDK code samples and more錛屽悓鏍鋒槸閫夋嫨64浣嶃?br />
2 瀹夎
榪愯 /sbin/init 3
榪涜鍛戒護琛屾ā寮忥紝濡傛灉涓寮濮嬫病鏈夊畨瑁呭浘褰㈢晫闈笉闇瑕佽繍琛屾鍛戒護銆?br /> ubuntu鐨勮繘琛屽懡浠よ妯″紡鍛戒護涓?/etc/init.d/gdm stop/start
鎴栬呯敤閿洏 ctrl+alt+f1
瀹夎Nvidia椹卞姩
ssh NVIDIA-Linux-x86_64-195.36.15-pkg2.run
涓璺粯璁ゅ畨瑁呭嵆鍙?br />
瀹夎Cuda toolkit
ssh cudatoolkit_3.0_linux_64_rhel5.3.run
榛樿瀹夎錛屽畨瑁呭畬鎴愬悗閰嶇疆鐜鍙橀噺
vim /etc/profile (root 鐢ㄦ埛)
export PATH=$PATH:/usr/local/cuda/bin
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/cuda/lib64:/usr/local/cuda/lib
閫鍑篤IM, source /etc/profile
榪涜鏅氱敤鎴鳳紝鍚屾牱璁?etc/profile鐢熸晥(source /etc/profile)
瀹夎 cudasdk
sh gpucomputingsdk_3.0_linux.run
涓璺粯璁ゅ嵆鍙紝榪涜鐢ㄦ埛鐩綍涓嬬殑
cd NVIDIA_GPU_Computing_SDK/C
鐩綍
make 鍛戒護
姝ゆ椂涔熻浼氭姤閿?br /> /usr/bin/ld: cannot find -lglut
yum install *glu*
浼氬彂鐜版湁 freeglut-dev鍖?br />
瀹夎
yum install freeglut-dev
鐒跺悗鍐峬ake鍗沖彲鎴愬姛銆?br />
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#PBS -q students
#PBS -j oe
#PBS -N heme
cd /home/sxtian/cf3/CF3-Cl
/usr/local/chemsoft/autodock4.2.2.1/bin/autodock4 -p CF3-Cl.dpf -l CF3-Cl.dlg
test1@master t]vi pbsjob
#!/bin/tcsh
#PBS -o /home/test1/pbstest/t/output 鏍囧噯杈撳嚭鏂囦歡
#PBS -e /home/test1/pbstest/t/error 閿欒杈撳嚭鏂囦歡
#PBS -l nodes=5:ppn=4 瑙勫畾浣跨敤鐨勮妭鐐規暟浠ュ強姣忎釜鑺傜偣鑳借窇澶氬皯鏍?/font>
#PBS –q students 鎶婁換鍔℃彁浜ゅ埌students闃熷垪涓?/font>
cd $PBS_O_WORKDIR 鍒板伐浣滅洰褰曚笅錛堟涓?/font>PBS鎻愪緵鐨勭幆澧冨彉閲忥級
mpirun –machine $PBS_NODEFILE -np 20 ./vasp
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NAME
pbs - general information on pbs
DESCRIPTION
PBS stands for Portable Batch System. It is a networked subsystem for
submitting, monitoring, and controlling a work load of batch jobs on
one or more systems. More information about PBS is available in the
PBS Users Guide.
Batch means that the job will be scheduled for execution at a time cho鈥?br /> sen by the subsystem according to a defined policy and the availability
of resources. For a normal batch job, the standard output and standard
error of the job will be returned to files available to the user when
the job is complete. This differs from an interactive session where
commands are executed when entered via the terminal and output is
returned directly to the terminal. PBS also supports an interactive
batch mode where the input and output is connected to the user’s termi鈥?br /> nal, but the scheduling of the job is still under control of the batch
system.
A job is typically a shell script and a set of attributes which provide
resource and control information about the job. A job does not have to
be submitted on the system where it will run, tt can be submitted on
any system with the PBS commands and access to the execution system,
see qsub(1B). Output will be returned to the system from which the job
was submitted unless directed otherwise.
Attributes offer control over when a job is eligible to be run, what
happens to the output when it is completed and how the user is notified
when it completes. The attributes of the job may be specified on the
command line or in the job script when the job is submitted. For
information about job attributes, see qsub(1B) and
pbs_job_attributes(7B).
One important attribute is the resource list. The list specifies the
amount and type of resources needed by the job in order to execute.
The list also implies a hard upper limit on usage of those resources.
When the limit is reached, the job is terminated. The types of
resources available to a job vary with the system architecture. For a
list of resources supported on the default system, see
pbs_resources(7B). There are man pages for other systems types as
well, see pbs_resources_aix4(7B), pbs_resources_fujitsu(7B),
pbs_resources_irix5(7B), pbs_resources_solaris5(7B),
pbs_resources_sp2(7B), pbs_resources_sunos4(7B), or pbs_resources_uni鈥?br /> cos8(7B).
Once a job has been submitted, it may be monitored by use of the
qstat(1B) command. Two forms of output are available with the qstat
command. The default form is the short display. Information about a
job is limited to a single line. Complete information about the job
or jobs is available through qstat with the -f option. Information
will be given about all jobs in the system, all jobs in specified
queues, or only specified jobs.
When displaying status of jobs, you will see in which queue the job
resides. In PBS a queue is just a collection point for jobs, it does
not imply any execution ordering. That ordering is determined by a
scheduling policy implemented by the system administration.
Other commands of interest which have man pages of their own are:
qalter Alter a job’s attributes.
qdel Delete a job.
qhold Place a hold on a job to keep it from being scheduled for run鈥?br /> ning.
qmove Move a job to a different queue or server.
qmsg Append a message to the output of an executing job.
qrerun Terminate an executing job and return it to a queue.
qrls Remove a hold from a job.
qselect Obtain a list of jobs that met certain criteria.
qsig Send a signal to an executing job.
SEE ALSO
qalter(1B), qdel(1B), qhold(1B), qmove(1B), qmsg(1B), qrerun(1B),
qrls(1B), qselect(1B), qsig(1B), qsub(1B) and the PBS User Guide.
Starting with qsub(1B), you can find all other available PBS man pages
by following references in the "See Also" section.
Local pbs(1B)
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